Student Publications

Recent First Author Papers

(^indicates the student has defended)

Clare Harper and Antoineen White (Lackner) The multifunctional nature of mitochondrial contact site proteins. Harper CS, White AJ, and Lackner LL. Current Opinion in Cell Biology. 2020 August;65:58-65.

Kathryn Evans (Andersen) The Gene scb-1 Underlies Variation in Caenorhabditis elegans Chemotherapeutic Responses. Evans KS and Andersen EC. G3: Genes, Genomes, Genetics. 2020 July 1;10(7):2353-2364.

Rachael Bakker (Carthew) The Wg and Dpp morphogens regulate gene expression by modulating the frequency of transcriptional bursts. Bakker R, Mani M, and Carthew RW. eLife. 2020 June 22;9:e56076.

Isaac Larkin^ (Mirkin) Dual-Readout Sandwich Immunoassay for Device-Free and Highly Sensitive Anthrax Biomarker Detection. Larkin IN, Garimella V, Yamankurt G, Scott AW, Xing H, and Mirkin CA. Analytical Chemistry. 2020 June 2;92(11):7845-7851.

Daniel Shams^ (Schwab) Spatial gradient sensing and chemotaxis via excitability in Dictyosteliudiscoideum. Shams DP, Yang X, Mehta P, and Schwab DJ. Physical Review E. 2020 June;101(6):062410.

Nolan Kennedy (Tullman-Ercek) Apparent size and morphology of bacterial microcompartments varies with technique. Kennedy NW, Hershewe JM, Nichols TM, Roth EW, Wilke CD, Mills CE, Jewett MC, and Tullman-Ercek D. PLoS ONE. 2020 March 9;15(3):e0226395.

Ryan Abdella (He) Structure of a paramyxovirus polymerase complex reveals a unique methyltransferase-CTD conformation. Abdella R, Aggarwal M, Okura T, Lamb RA, and He Y. PNAS. 2020 March 3;117(9):4931-4941.

Ritika Giri (Carthew) Ordered patterning of the sensory system is susceptible to stochastic features of gene expression. Giri R, Papadopoulos DK, Posadas DM, Potluri HK, Tomancak P, Mani M, and Carthew RW. eLife. 2020 February 26;9:e53638.

Joseph Muldoon (Leonard/Bagheri) Macrophages employ quorum licensing to regulate collective activation. Muldoon JJ, Chuang Y, Bagheri N, and Leonard JN. Nature Communications. 2020 February 13;11:878.

Patrick Donahue (Leonard) The COMET toolkit for composing customizable genetic programs in mammalian cells. Donahue PS, Draut JW, Muldoon JJ, Edelstein HI, Bagheri N, and Leonard JN. Nature Communications. 2020 February 7;11:779.

Peter Doubleday^ (Kelleher) Elucidating Proteoform Dynamics Underlying the Senescence Associated Secretory Phenotype. Doubleday PF, Fornelli L, and Kelleher NL. Journal of Proteome Research. 2020 February 7;19(2):938-948.

Pamela Agbu (Carthew) MicroRNA miR-7 Regulates Secretion of Insulin-Like Peptides. Agbu P, Cassidy JJ, Braverman J, Jacobson A, and Carthew RW. Endocrinology. 2020 February;161(2):bqz040.

Gokay Yamankurt^ (Mirkin/Carthew) The effector mechanism of siRNA spherical nucleic acids. Yamankurt G, Stawicki RJ, Posadas DM, Nguyen JQ, Carthew RW, and Mirkin CA. PNAS. 2020 January 21;117(3):1312-1320.

Alexander Karge^ (Petersen) tec-1 kinase negatively regulates regenerative neurogenesis in planarians. Karge A, Bonar NA, Wood S, and Petersen CP. eLife. 2020 January 20;9:e47293.

Erik Schad^ (Petersen) STRIPAK Limits Stem Cell Differentiation of a WNT Signaling Center to Control Planarian Axis Scaling. Schad EG and Petersen CP. Current Biology. 2020 January 20;30(2):254-263.e2.

Nisan Hubbard^ (Mayo) Activation of Notch Signaling by Oocytes and Jag1 in Mouse Ovarian Granulosa Cells. Hubbard N, Prasasya RD, and Mayo KE. Endocrinology. 2019 December;160(12):2863-2876.

Justin Finkle^ (Bagheri) Hybrid analysis of gene dynamics predicts context specific expression and offers regulatory insights. Finkle JD and Bagheri N. Bioinformatics. 2019 November 15;35(22):4671-4678.

Kaleigh Roberts (Meade) Inhibition of Amyloid-β Aggregation by Cobalt(III) Schiff Base Complexes: A Computational and Experimental Approach. Iscen A, Brue CR, Roberts KF, Kim J, Schatz GC, and Meade TJ. Journal of the American Chemical Society. 2019 October 23;141(42):16685-16695.

Benjamin Parker^ (Weiss) Mapping low-affinity/high-specificity peptide–protein interactions using ligand-footprinting mass spectrometry. Parker BW, Goncz EJ, Krist DT, Statsyuk AV, Nesvizhskii AI, and Weiss EL. PNAS. 2019 October 15;116(42):21001-21011.

Patric Ho (Bao) Unwinding chromatin at the right places: how BAF is targeted to specific genomic locations during development. Ho PJ, Lloyd SM, and Bao X. Development. 2019 September 30;146(19):178780.

Ryan Marcum^ (Radhakrishnan) Inositol phosphates and core subunits of the Sin3L/Rpd3L histone deacetylase (HDAC) complex up-regulate deacetylase activity. Marcum RD and Radhakrishnan I. Journal of Biological Chemistry. 2019 September 20;294(38):13928-13938.

Joseph Muldoon (Bagheri) Network inference performance complexity: a consequence of topological, experimental and algorithmic determinants. Muldoon JJ, Yu JS, Fassia M-K, and Bagheri N. Bioinformatics. 2019 September 15;35(18):3421-3432.

Sarah Lloyd (Bao) Pinpointing the Genomic Localizations of Chromatin‐Associated Proteins: The Yesterday, Today, and Tomorrow of ChIP‐seq. Lloyd SM and Bao X. Current Protocols in Cell Biology. 2019 September 3;84(1):e89.

Amy Neely (Bao) Nuclei Isolation Staining (NIS) Method for Imaging Chromatin‐Associated Proteins in Difficult Cell Types. Neely AE and Bao X. Current Protocols in Cell Biology. 2019 September 3;84(1):e94.

Anne d'Aquino^ (Jewett) Engineered ribosomes with tethered subunits for expanding biological function. Carlson ED, d'Aquino AE, Kim DS, Fulk EM, Hoang K, Szal T, Mankin AS, and Jewett MC. Nature Communications. 2019 September 2;10:3920.

Jasmine Lucas^ (Schmidt) Cellular properties of intrinsically photosensitive retinal ganglion cells during postnatal development. Lucas JA and Schmidt TM. Neural Development. 2019 August 30;14:8.

Xiaoxiao Huang^ (Kelleher/Licht) Defining the NSD2 interactome: PARP1 PARylation reduces NSD2 histone methyltransferase activity and impedes chromatin binding. Huang X, LeDuc RD, Fornelli L, Schunter AJ, Bennett RL, Kelleher NL, and Licht JD. Journal of Biological Chemistry. 2019 August 16;294(33):12459-12471.

Shannon Brady^ (Andersen) A Novel Gene Underlies Bleomycin-Response Variation in Caenorhabditis elegans. Brady SC, Zdraljevic S, Bisaga KW, Tanny RE, Cook DE, Lee D, Wang Y, and Andersen EC. Genetics. 2019 August 1;212(4):1453-1468.

Carissa Heath^ (Wignall) Chromokinesin Kif4 promotes proper anaphase in mouse oocyte meiosis. Heath CM and Wignall SM. Molecular Biology of the Cell. 2019 July 1;30(14):1691-1704.

Soo Ro^ (Rosenzweig) Native top-down mass spectrometry provides insights into the copper centers of membrane-bound methane monooxygenase. Ro SY, Schachner LF, Koo CW, Purohit R, Remis JP, Kenney GE, Liauw BW, Thomas PM, Patrie SM, Kelleher NL, and Rosenzweig AC. Nature Communications. 2019 June 17;10:2675.

Shuya Wang^ (Mirkin) Rational vaccinology with spherical nucleic acids. Wang S, Qin L, Yamankurt G, Skakuj K, Huang Z, Chen P-C, Dominguez D, Lee A, Zhang B, and Mirkin CA. PNAS. 2019 May 21;116(21):10473-10481.

Ran Yang^ (Beitel) QuBiT: a quantitative tool for analyzing epithelial tubes reveals unexpected patterns of organization in the Drosophila trachea. Yang R, Li E, Kwon Y-J, Mani M, and Beitel GJ. Development. 2019 May 16;146(12):dev172759.

Matthew Ross^ (Rosenzweig/Hoffman) Particulate methane monooxygenase contains only mononuclear copper centers. Ross MO, MacMillan F, Wang J, Nisthal A, Lawton TJ, Olafson BD, Mayo SL, Rosenzweig AC, and Hoffman BM. Science. 2019 May 10;364(6440):566-570.

Bryan Dorsey^ (Mondragón) Structural organization of a Type III-A CRISPR effector subcomplex determined by X-ray crystallography and cryo-EM. Dorsey BW, Huang L, and Mondragón A. Nucleic Acids Research. 2019 April 23;47(7):3765-3783.

Matthew Verosloff (Lucks) PLANT-Dx: A Molecular Diagnostic for Point of Use Detection of Plant Pathogens. Verosloff M, Chappell J, Perry KL, Thompson JR, and Lucks JB. ACS Synthetic Biology. 2019 April 19;8(4):902-905.

Stefan Zdraljevic^ (Andersen) Natural variation in C. elegans arsenic toxicity is explained by differences in branched chain amino acid metabolism. Zdraljevic S, Fox BW, Strand C, Panda O, Tenjo FJ, Brady SC, Crombie TA, Doench JG, Schroeder FC, and Andersen EC. eLife. 2019 April 8:e40260.

Fangke Xu^ (Allada) Circadian Clocks Function in Concert with Heat Shock Organizing Protein to Modulate Mutant Huntingtin Aggregation and Toxicity. Xu F, Kula-Eversole E, Iwanaszko M, Hutchison AL, Dinner A, and Allada R. Cell Reports. 2019 April 2;27(1):59-70.

Gokay Yamankurt^ (Mirkin) Exploration of the nanomedicine-design space with high-throughput screening and machine learning. Yamankurt G, Berns EJ, Xue A, Lee A, Bagheri N, Mrksich M, and Mirkin CA. Nature Biomedical Engineering. 2019 April;3(4):318-327.

Ronald Biggs (Marko) Effects of altering histone posttranslational modifications on mitotic chromosome structure and mechanics. Biggs R, Liu PZ, Stephens AD, and Marko JF. Molecular Biology of the Cell. 2019 March 21;30(7):820-827.

Jennifer Ferrer^ (Mirkin/Wertheim) Dual Toll-Like Receptor Targeting Liposomal Spherical Nucleic Acids. Ferrer JR, Wertheim JA, and Mirkin CA. Bioconjugate Chemistry. 2019 March 20;30(3):944-951.

Matthew Ross^ (Rosenzweig/Hoffman) Formation and Electronic Structure of an Atypical CuSite. Ross MO, Fisher OS, Morgada MN, Krzyaniak MD, Wasielewski MR, Vila AJ, Hoffman BM, and Rosenzweig AC. Journal of the American Chemical Society. 2019 March 20;141(11):4678-4686.

Miranda Jacobs (Kamat) Diblock copolymers enhance folding of a mechanosensitive membrane protein during cell-free expression. Jacobs ML, Boyd MA, and Kamat NP. PNAS. 2019 March 5;116(10):4031-4036.

Saoirse McSharry^ (Beitel) The Caspase-3 homolog DrICE regulates endocytic trafficking during Drosophila tracheal morphogenesis. McSharry SS and Beitel GJ. Nature Communications. 2019 March 4;10(1):1031.

Lauren Kraft^ (Lackner) A conserved mechanism for mitochondria-dependent dynein anchoring. Kraft LM and Lackner LL. Molecular Biology of the Cell. 2019 March 1;30(5):691-702.

Sean Allen^ (Scott) Celastrol-loaded PEG-b-PPS nanocarriers as an anti-inflammatory treatment for atherosclerosis. Allen SD, Liu Y-G, Kim T, Bobbala S, Yi S, Zhang X, Choi J, and Scott EA. Biomaterials Science. 2019 February 1;7(2):657-668.

Kari Tanaka^ (Pinkett) Oligopeptide-binding protein from nontypeable Haemophilus influenzae has ligand-specific sites to accommodate peptides and heme in the binding pocket. Tanaka KJ and Pinkett HW. Journal of Biological Chemistry. 2019 January 18;294(3):1070-1082.

Elsy Buitrago Delgado^ (LaBonne) A transition from SoxB1 to SoxE transcription factors is essential for progression from pluripotent blastula cells to neural crest cells. Buitrago-Delgado E, Schock EN, Nordin K, and LaBonne C. Developmental Biology. 2018 December 15;444(2):50-61.

Irem Unlü^ (Wang) The cyclic phosphodiesterase CNP and RNA cyclase RtcA fine-tune noncanonical XBP1 splicing during ER stress. Unlu I, Lu Y, and Wang X. Journal of Biological Chemistry. 2018 December 14;293(50):19365-19376.

Kathryn Evans and Shannon Brady^ (Andersen) Shared Genomic Regions Underlie Natural Variation in Diverse Toxin Responses. Evans KS, Brady SC, Bloom JS, Tanny RE, Cook DE, Giuliani SE, Hippleheuser SW, Zamanian M, and Andersen EC. Genetics. 2018 December 1;210(4):1509-1525.

Nancy Au Yeung^ (Horvath) Transcriptional and chromatin regulation in interferon and innate antiviral gene expression. Au-Yeung N and Horvath CM. Cytokine & Growth Factor Reviews. 2018 December;44:11-17.

Katarzyna Soczek^ (Mondragón) CryoEM structures of open dimers of Gyrase A in complex with DNA illuminate mechanism of strand passage. Soczek KM, Grant T, Rosenthal PB, and Mondragon A. eLife. 2018 November 20;7:e41215.

Roli Mandhana Kasat^ (Horvath) Sendai Virus Infection Induces Expression of Novel RNAs in Human Cells. Mandhana R and Horvath CM. Scientific Reports. 2018 November 14;8:16815.

Stefan Zdraljevic^ (Andersen) Extreme allelic heterogeneity at a Caenorhabditis elegans beta-tubulin locus explains natural resistance to benzimidazoles. Hahnel SR, Zdraljevic S, Rodriguez BC, Zhao Y, McGrath PT, and Andersen EC. PLoS Pathogens. 2018 October 29;14(10):e1007226.

Sean Allen^ (Scott) Benchmarking Bicontinuous Nanospheres against Polymersomes for in Vivo Biodistribution and Dual Intracellular Delivery of Lipophilic and Water-Soluble Payloads. Allen SD, Bobbala S, Karabin NB, Modak M, and Scott EA. ACS Applied Materials & Interfaces. 2018 October 10;10(40):33857-33866.

Sean Allen^ (Scott) Polymersomes scalably fabricated via flash nanoprecipitation are non-toxic in non-human primates and associate with leukocytes in the spleen and kidney following intravenous administration. Allen SD, Liu Y-G, Bobbala S, Cai L, Hecker PI, Temel R, and Scott EA. Nano Research. 2018 October;11(10):5689-5703.

Soo Ro^ (Rosenzweig) Structure and function of the lanthanide-dependent methanol dehydrogenase XoxF from the methanotroph Methylomicrobium buryatense 5GB1C. Deng YW, Ro SY, and Rosenzweig AC. Journal of Biological Inorganic Chemistry. 2018 October;23(7):1037-1047.

Benjamin Des Soye^ (Jewett) Establishing a High-Yielding Cell-Free Protein Synthesis Platform Derived from Vibrio natriegens. Des Soye BJ, Davidson SR, Weinstock MT, Gibson DG, and Jewett MC. ACS Synthetic Biology. 2018 September 21;7(9):2245-2255.

WeiTing Chen (Lackner) Direct membrane binding and self-interaction contribute to Mmr1 function in mitochondrial inheritance. Chen W, Ping HA, and Lackner LL. Molecular Biology of the Cell. 2018 September 15;29(19):2346-2357.

Amanda Davis-Roca^ (Wignall) Dynamic SUMO remodeling drives a series of critical events during the meiotic divisions in C. elegans. Davis-Roca AC, Divekar NS, Ng RK, and Wignall SM. PLoS Genetics. 2018 September 4;14(9):e1007626.

Nancy Au Yeung^ (Horvath) Histone H2A.Z Suppression of Interferon-Stimulated Transcription and Antiviral Immunity Is Modulated by GCN5 and BRD2. Au-Yeung N and Horvath CM. iScience. 2018 August 31;6:68-82.

Anjali Rao^ (LaBonne) Histone deacetylase activity has an essential role in establishing and maintaining the vertebrate neural crest. Rao A and LaBonne C. Development. 2018 August 8;145(15):dev163386.

Roli Mandhana Kasat^ (Horvath) Constitutively Active MDA5 Proteins Are Inhibited by Paramyxovirus V Proteins. Mandhana R, Qian LK, and Horvath CM. Journal of Interferon & Cytokine Research. 2018 August;38(8):319-332.

Alexandra de Paz^ (Tyo) High-resolution mapping of DNA polymerase fidelity using nucleotide imbalances and next-generation sequencing. de Paz AM, Cybulski TR, Marblestone AH, Zamft BM, Church GM, Boyden ES, Kording KP, and Tyo KEJ. Nucleic Acids Research. 2018 July 27;46(13):e78.

Heidi Schmit and Lauren Kraft^ (Lackner) The role of mitochondria in anchoring dynein to the cell cortex extends beyond clustering the anchor protein. Schmit HL, Kraft LM, Lee-Smith CF, and Lackner LL. Cell Cycle. 2018 July 25;17(11):1345-1357.

Soo Ro^ (Rosenzweig) From micelles to bicelles: Effect of the membrane on particulate methane monooxygenase activity. Ro SY, Ross MO, Deng YW, Batelu S, Lawton TJ, Hurley JD, Stemmler TL, Hoffman BM, and Rosenzweig AC. Journal of Biological Chemistry. 2018 July 6;293(27):10457-10465.

Molly Frey (Scott) Influences of nanocarrier morphology on therapeutic immunomodulation. Frey M, Bobbala S, Karabin N, and Scott E. Nanomedicine. 2018 July;13(14):1795-1811.

Jessica Lenoir (Horvath) RNA sensor LGP2 inhibits TRAF ubiquitin ligase to negatively regulate innate immune signaling. Parisien J-P, Lenoir JJ, Mandhana R, Rodriguez KR, Qian K, Bruns AM, and Horvath CM. EMBO reports. 2018 June 1;19(6):e45176.

Anne d'Aquino^ (Jewett) Engineered Ribosomes for Basic Science and Synthetic Biology. d'Aquino AE, Kim DS, and Jewett MC. Annual Review of Chemical and Biomolecular Engineering. 2018 June;9:311-340.

Simona Morochnik^ (Ameer/Szleifer) A thermoresponsive, citrate-based macromolecule for bone regenerative engineering. Morochnik S, Zhu Y, Duan C, Cai M, Reid RR, He T-C, Koh J, Szleifer I, and Ameer GA. Journal of Biomedical Materials Research Part A. 2018 June;106(6):1743-1752.

Lauren Kraft^ (Lackner) Mitochondrial anchors: Positioning mitochondria and more. Kraft LM and Lackner LL. Biochemical and Biophysical Research Communications. 2018 May 27;500(1):2-8.

Matthew Robey^ (Kelleher) Identification of the First Diketomorpholine Biosynthetic Pathway Using FAC-MS Technology. Robey MT, Ye R, Bok JW, Clevenger KD, Islam MN, Chen C, Gupta R, Swyers M, Wu E, Gao P, Thomas PM, Wu CC, Keller NP, and Kelleher NL. ACS Chemical Biology. 2018 May 18;13(5):1142-1147.

Clarence Chan^ (Mondragón) Crystal Structure of Human Rpp20/Rpp25 Reveals Quaternary Level Adaptation of the Alba Scaffold as Structural Basis for Single-stranded RNA Binding. Chan CW, Kiesel BR, and Mondragón A. Journal of Molecular Biology. 2018 May 11;430(10):1403-1416.

Nicolas Daffern (Radhakrishnan) Solution Nuclear Magnetic Resonance Studies of the Ligand-Binding Domain of an Orphan Nuclear Receptor Reveal a Dynamic Helix in the Ligand-Binding Pocket. Daffern N, Chen Z, Zhang Y, Pick L, and Radhakrishnan I. Biochemistry. 2018 April 3;57(13):1977-1986.

Kari Tanaka^ (Pinkett) Selective substrate uptake: The role of ATP-binding cassette (ABC) importers in pathogenesis. Tanaka KJ, Song S, Mason K, and Pinkett HW. Biochimica et Biophysica Acta - Biomembranes. 2018 April;1860(4):868-877.

Grace Kenney^ (Rosenzweig) The biosynthesis of methanobactin. Kenney GE, Dassama LMK, Pandelia M, Gizzi AS, Martinie RJ, Gao P, DeHart CJ, Schachner LF, Skinner OS, Ro SY, Zhu X, Sadek M, Thomas PM, Almo SC, Bollinger JM, Krebs C, Kelleher NL, and Rosenzweig AC. Science. 2018 March 23;359(6382):1411-1416.

Eric Hill^ (Petersen) Positional information specifies the site of organ regeneration and not tissue maintenance in planarians. Hill EM and Petersen CP. eLife. 2018 March 16;7:e33680

Justin Finkle^ (Bagheri) and Jia Wu^ (Bagheri/Miller) Windowed Granger causal inference strategy improves discovery of gene regulatory networks. Finkle JD, Wu JJ, and Bagheri N. PNAS. 2018 February 27;115(9):2252-2257.

Shuya Wang^ (Mirkin) Conjugation Chemistry-Dependent T-Cell Activation with Spherical Nucleic Acids. Skakuj K, Wang S, Qin L, Lee A, Zhang B, and Mirkin CA. Journal of the American Chemical Society. 2018 January 31;140(4):1227-1230.

Lauren Geary^ (LaBonne) FGF mediated MAPK and PI3K/Akt Signals make distinct contributions to pluripotency and the establishment of Neural Crest. Geary L and LaBonne C. eLife. 2018 January 19;7:e33845.

Rexxi Prasasya^ (Mayo) Notch Signaling Regulates Differentiation and Steroidogenesis in Female Mouse Ovarian Granulosa Cells. Prasasya RD and Mayo KE. Endocrinology. 2018 January 1;159(1):184-198.

Soo Ro^ (Rosenzweig) Recent Advances in the Genetic Manipulation of Methylosinus trichosporium OB3b. Ro SY and Rosenzweig AC. Methods in Enzymology. 2018;605:335-349.

Varun Sood^ (Brickner) Genetic and Epigenetic Strategies Potentiate Gal4 Activation to Enhance Fitness in Recently Diverged Yeast Species. Sood V and Brickner JH. Current Biology. 2017 December 4;27(23):3591-3602.e3.

Joseph Muldoon (Bagheri/Leonard) and Patrick Donahue (Leonard) Building with intent: Technologies and principles for engineering mammalian cell-based therapies to sense and respond. Muldoon JJ, Donahue PS, Dolberg TB, and Leonard JN. Current Opinion in Biomedical Engineering. 2017 December;4:127-133.

Stefan Zdraljevic^ (Andersen) Natural diversity facilitates the discovery of conserved chemotherapeutic response mechanisms. Zdraljevic S and Andersen EC. Current Opinion in Genetics & Development. 2017 December;47:41-47.

Joseph Muldoon (Bagheri/Leonard) Multiplexing Engineered Receptors for Multiparametric Evaluation of Environmental Ligands. Hartfield RM, Schwarz KA, Muldoon JJ, Bagheri N, and Leonard JN. ACS Synthetic Biology. 2017 November 17;6(11):2042-2055.

Bethany Sump (Brickner) Nup98 regulation of histone methylation promotes normal gene expression and may drive leukemogenesis. Sump B and Brickner JH. Genes & Development. 2017 November 15;31(22):2201-2203.

Luay Almassalha^ (Backman/Szleifer) and Greta Bauer^ (Backman) Macrogenomic engineering via modulation of the scaling of chromatin packing density. Almassalha LM, Bauer GM, Wu W, Cherkezyan L, Zhang D, Kendra A, Gladstein S, Chandler JE, VanDerway D, Seagle BL, Ugolkov A, Billadeau DD, O'Halloran TV, Mazar AP, Roy HK, Szleifer I, Shahabi S, and Backman V. Nature Biomedical Engineering. 2017 November 6;1:902-913.

Simona Morochnik^ (Ameer/Szleifer) Structural behavior of competitive temperature and pH-responsive tethered polymer layers. Morochnik S, Nap RJ, Ameer GA, and Szleifer I. Soft Matter. 2017 October 7;13(37):6322-6331.

Lauren Kraft^ (Lackner) Mitochondria-driven assembly of a cortical anchor for mitochondria and dynein. Kraft LM and Lackner LL. Journal of Cell Biology. 2017 October 2;216(10):3061.

Sean Allen^ (Scott) Facile assembly and loading of theranostic polymersomes via multi-impingement flash nanoprecipitation. Allen S, Osorio O, Liu Y-G, and Scott E. Journal of Controlled Release. 2017 September 28;262:91-103.

Victoria Church^ (Carthew) Microprocessor Recruitment to Elongating RNA Polymerase II Is Required for Differential Expression of MicroRNAs. Church VA, Pressman S, Isaji M, Truscott M, Cizmecioglu NT, Buratowski S, Frolov MV, and Carthew RW. Cell Reports. 2017 September 26;20(13):3123-3134.

Timothy Mullen^ (Wignall) Interplay between microtubule bundling and sorting factors ensures acentriolar spindle stability during C. elegans oocyte meiosis. Mullen TJ and Wignall SM. PLoS Genetics. 2017 September 14;13(9):e1006986.

Varun Sood^ (Brickner) Epigenetic Transcriptional Memory of GAL Genes Depends on Growth in Glucose and the Tup1 Transcription Factor in Saccharomyces cerevisiae. Sood V, Cajigas I, D'Urso A, Light WH, and Brickner JH. Genetics. 2017 August 1;206(4):1895-1907.

Stefan Zdraljevic^ (Andersen) Natural variation in a single amino acid substitution underlies physiological responses to topoisomerase II poisons. Zdraljevic S, Strand C, Seidel HS, Cook DE, Doench JG, and Andersen EC. PLoS Genetics. 2017 July 12;13(7):e1006891.

Rebecca Martin^ (Widom/Marko) A comparison of nucleosome organization in Drosophila cell lines. Martin RL, Maiorano J, Beitel GJ, Marko JF, McVicker G, and Fondufe-Mittendorf YN. PLoS ONE. 2017 June 1;12(6):e0178590.

Sarah Stainbrook^ (Tyo) Modulating and evaluating receptor promiscuity through directed evolution and modeling. Stainbrook SC, Yu JS, Reddick MP, Bagheri N, and Tyo KEJ. Protein Engineering Design & Selection. 2017 June 1;30(6):455-465.

Daniel Cook^ (Andersen) VCF-kit: assorted utilities for the variant call format. Cook DE and Andersen EC. Bioinformatics. 2017 May 15;33(10):1581-1582.

Amanda Davis-Roca^ (Wignall) Caenorhabditis elegans oocytes detect meiotic errors in the absence of canonical end-on kinetochore attachments. Davis-Roca AC, Muscat CC, and Wignall SM. Journal of Cell Biology. 2017 May 1;216(5):1243-1253.

Kathryn Gunn^ (Mondragón) An orthogonal single-molecule experiment reveals multiple-attempt dynamics of type IA topoisomerases. Gunn KH, Marko JF, and Mondragón A. Nature Structural & Molecular Biology. 2017 May;24(5):484-490.

Timothy Sita^ (Mirkin/Stegh) Dual bioluminescence and near-infrared fluorescence monitoring to evaluate spherical nucleic acid nanoconjugate activity in vivo. Sita TL, Kouri FM, Hurley LA, Merkel TJ, Chalastanis A, May JL, Ghelfi ST, Cole LE, Cayton TC, Barnaby SN, Sprangers AJ, Savalia N, James CD, Lee A, Mirkin CA, and Stegh AH. PNAS. 2017 April 18;114(16):4129-4134.

Agustina D'Urso^ (Brickner) Memory Is the Treasury and Guardian of All Things. D'Urso A and Brickner JH. Molecular Cell. 2017 April 6;66(1):5-6.

Matthew Ross^ (Rosenzweig) A tale of two methane monooxygenases. Ross MO and Rosenzweig AC. Journal of Biological Inorganic Chemistry. 2017 April;22(2):307-319.

Rachael Bakker (Carthew) MicroRNAs Make a Difference in Cardiovascular Robustness. Bakker R and Carthew RW. Developmental Cell. 2017 March 27;40(6):515-516.

Nicolle Bonar^ (Petersen) Integrin suppresses neurogenesis and regulates brain tissue assembly in planarian regeneration. Bonar NA and Petersen CP. Development. 2017 March 1;144(5):784-794.

Andrew Younger^ (Leonard) Engineering Modular Biosensors to Confer Metabolite-Responsive Regulation of Transcription. Younger AKD, Dalvie NC, Rottinghaus AG, and Leonard JN. ACS Synthetic Biology. 2017 February 17;6(2):311-325.

Luay Almassalha^ (Backman/Szleifer) The Global Relationship between Chromatin Physical Topology, Fractal Structure, and Gene Expression. Almassalha LM, Tiwari A, Ruhoff PT, Stypula-Cyrus Y, Cherkezyan L, Matsuda H, Dela Cruz MA, Chandler JE, White C, Maneval C, Subramanian H, Szleifer I, Roy HK, and Backman V. Scientific Reports. 2017 January 24;7:41061.

Anthony Goering^ (Kelleher) In Vitro Reconstruction of Nonribosomal Peptide Biosynthesis Directly from DNA Using Cell-Free Protein Synthesis. Goering AW, Li J, McClure RA, Thomson RJ, Jewett MC, and Kelleher NL. ACS Synthetic Biology. 2017 January 20;6(1):39-44.

Adam Hockenberry^ (Jewett/Amaral) Leveraging genome-wide datasets to quantify the functional role of the anti-Shine–Dalgarno sequence in regulating translation efficiency. Hockenberry AJ, Pah AR, Jewett MC, and Amaral LAN. Open Biology. 2017 January 18;7:160239.

Nikhil Ram Mohan^ (Meade) Gd(III)-Gold Nanoconjugates Provide Remarkable Cell Labeling for High Field Magnetic Resonance Imaging. Rammohan N, Holbrook RJ, Rotz MW, MacRenaris KW, Preslar AT, Carney CE, Reichova V, and Meade TJ. Bioconjugate Chemistry. 2017 January 18;28(1):153-160.

Kathryn Evans (Andersen) Correlations of Genotype with Climate Parameters Suggest Caenorhabditis elegans Niche Adaptations. Evans KS, Zhao Y, Brady SC, Long L, McGrath PT, and Andersen EC. G3. 2017 January 1;7(1):289-298.

Daniel Cook^ (Andersen) CeNDR, the Caenorhabditis elegans natural diversity resource. Cook DE, Zdraljevic S, Roberts JP, and Andersen EC. Nucleic Acids Research. 2017 January;45(D1):D650-D657.

Adelita Mendoza^ (O'Halloran) Zinc availability during germline development impacts embryo viability in Caenorhabditis elegans. Mendoza AD, Woodruff TK, Wignall SM, and O'Halloran TV. Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology. 2017 January;191:194-202.

Nikhil Ram Mohan^ (Meade) Nanodiamond–Gadolinium(III) Aggregates for Tracking Cancer Growth In Vivo at High Field. Rammohan N, MacRenaris KW, Moore LK, Parigi G, Mastarone DJ, Manus LM, Lilley LM, Preslar AT, Waters EA, Filicko A, Luchinat C, Ho D, and Meade TJ. Nano Letters. 2016 December 14;16(12):7551-7564.

Lilien Voong^ (Wang) Insights into Nucleosome Organization in Mouse Embryonic Stem Cells through Chemical Mapping. Voong LN, Xi L, Sebeson AC, Xiong B, Wang J-P, and Wang X. Cell. 2016 December 1;167(6):1555-1570.

Luay Almassalha^ (Backman/Szleifer) and Greta Bauer^ (Backman) Label-free imaging of the native, living cellular nanoarchitecture using partial-wave spectroscopic microscopy. Almassalha LM, Bauer GM, Chandler JE, Gladstein S, Cherkezyan L, Stypula-Cyrus Y, Weinberg S, Zhang D, Ruhoff PT, Roy HK, Subramanian H, Chandel NS, Szleifer I, and Backman V. PNAS. 2016 October 18;113(42):E6372-E6381.

Ian Wolff (Wignall) Assembly of Caenorhabditis elegans acentrosomal spindles occurs without evident microtubule-organizing centers and requires microtubule sorting by KLP-18/kinesin-12 and MESP-1. Wolff ID, Tran MV, Mullen TJ, Villeneuve AM, and Wignall SM. Molecular Biology of the Cell. 2016 October 15;27(20):3122-3131.

Sucharita Bhattacharyya^ (Matouschek) An assay for 26S proteasome activity based on fluorescence anisotropy measurements of dye-labeled protein substrates. Bhattacharyya S, Renn JP, Yu H, Marko JF, and Matouschek A. Analytical Biochemistry. 2016 September 15;509:50-59.

Grace Kenney^ (Rosenzweig) Characterization of Methanobactin from Methylosinus sp. LW4. Kenney GE, Goering AW, Ross MO, DeHart CJ, Thomas PM, Hoffman BM, Kelleher NL, and Rosenzweig AC. Journal of the American Chemical Society. 2016 September 7;138(35):11124-11127.

Daniel Cook^ (Andersen) The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length. Cook DE, Zdraljevic S, Tanny RE, Seo B, Riccardi DD, Noble LM, Rockman MV, Alkema MJ, Braendle C, Kammenga JE, Wang J, Kruglyak L, Félix M-A, Lee J, and Andersen EC. Genetics. 2016 September 1;204(1):371-383.

Grace Kenney^ (Rosenzweig) Copper-responsive gene expression in the methanotroph Methylosinus trichosporium OB3b. Kenney GE, Sadek M, and Rosenzweig AC. Metallomics. 2016 September 1;8(9):931-940.

Adrienne Eastland^ (Marko) Dependence of the structure and mechanics of metaphase chromosomes on oxidized cysteines. Eastland A, Hornick J, Kawamura R, Nanavati D, and Marko JF. Chromosome Research. 2016 September;24(3):339-353.

Timothy Toby^ (Kelleher) A researcher's guide to mass spectrometry-based proteomics. Savaryn JP, Toby TK, and Kelleher NL. Proteomics. 2016 September;16(18):2435-2443.

Luay Almassalha^ (Backman) Superresolution intrinsic fluorescence imaging of chromatin utilizing native, unmodified nucleic acids for contrast. Dong B, Almassalha LM, Stypula-Cyrus Y, Urban BE, Chandler JE, Nguyen T-Q, Sun C, Zhang HF, and Backman V. PNAS. 2016 August 30;113(35):9716-9721.

Matthew Henke^ (Kelleher) New Aspercryptins, Lipopeptide Natural Products, Revealed by HDAC Inhibition in Aspergillus nidulans. Henke MT, Soukup AA, Goering AW, McClure RA, Thomson RJ, Keller NP, and Kelleher NL. ACS Chemical Biology. 2016 August 19;11(8):2117-2123.

Constanza Vásquez Doorman^ (Petersen) The NuRD complex component p66 suppresses photoreceptor neuron regeneration in planarians. Vásquez-Doorman C and Petersen CP. Regeneration. 2016 August 18;3(3):168-178.

Matthew Henke^ (Kelleher) Modern mass spectrometry for synthetic biology and structure-based discovery of natural products. Henke MT and Kelleher NL. Natural Product Reports. 2016 August 1;33(8):942-950.

Mark Perelis^ (Bass) Circadian Transcription from Beta Cell Function to Diabetes Pathophysiology. Perelis M, Ramsey KM, Marcheva B, and Bass J. Journal of Biological Rhythms. 2016 August;31(4):323-336.

Luay Almassalha^ (Backman) Super-resolution spectroscopic microscopy via photon localization. Dong B, Almassalha L, Urban BE, Nguyen T-Q, Khuon S, Chew T-L, Backman V, Sun C, and Zhang HF. Nature Communications. 2016 July 25;7:12290.

Carlo Randise-Hinchliff^ (Brickner) Transcription factors dynamically control the spatial organization of the yeast genome. Randise-Hinchliff C and Brickner JH. Nucleus. 2016 July 21;7(4):369-374.

Houqing Yu^ (Matouschek) Conserved Sequence Preferences Contribute to Substrate Recognition by the Proteasome. Yu H, Singh Gautam AK, Wilmington SR, Wylie D, Martinez-Fonts K, Kago G, Warburton M, Chavali S, Inobe T, Finkelstein IJ, Babu MM, and Matouschek A. Journal of Biological Chemistry. 2016 July 8;291(28):14526-14539.

Timothy Toby^ (Kelleher) Comparative top down proteomics of peripheral blood mononuclear cells from kidney transplant recipients with normal kidney biopsies or acute rejection. Savaryn JP, Toby TK, Catherman AD, Fellers RT, LeDuc RD, Thomas PM, Friedewald JJ, Salomon DR, Abecassis MM, and Kelleher NL. Proteomics. 2016 July;16(14):2048-2058.

Agustina D'Urso^ (Brickner) Set1/COMPASS and Mediator are repurposed to promote epigenetic transcriptional memory. D'Urso A, Takahashi Y-H, Xiong B, Marone J, Coukos R, Randise-Hinchliff C, Wang J-P, Shilatifard A, and Brickner JH. eLife. 2016 June 23;5:e16691.

Timothy Toby^ (Kelleher) Progress in Top-Down Proteomics and the Analysis of Proteoforms. Toby TK, Fornelli L, and Kelleher NL. Annual Review of Analytical Chemistry. 2016 June;9:499-519.

Michelle Hung^ (Leonard) A Platform for Actively Loading Cargo RNA to Elucidate Limiting Steps in EV-mediated Delivery. Hung ME and Leonard JN. Journal of Extracellular Vesicles. 2016 May 13;5:31027.

Arlise Andress^ (Carthew) Spindle-E cycling between nuage and cytoplasm is controlled by Qin and PIWI proteins. Andress A, Bei Y, Fonslow BR, Giri R, Wu Y, Yates JR, and Carthew RW. Journal of Cell Biology. 2016 April 25;213(2):201-211.

Shameika Wilmington^ (Matouschek) An Inducible System for Rapid Degradation of Specific Cellular Proteins Using Proteasome Adaptors. Wilmington SR and Matouschek A. PLoS ONE. 2016 April 4;11(4):e0152679.

Kirby Martinez-Fonts^ (Matouschek) A Rapid and Versatile Method for Generating Proteins with Defined Ubiquitin Chains. Martinez-Fonts K and Matouschek A. Biochemistry. 2016 March 29;55(12):1898-1908.

Carlo Randise-Hinchliff^ (Brickner) Strategies to regulate transcription factor–mediated gene positioning and interchromosomal clustering at the nuclear periphery. Randise-Hinchliff C, Coukos R, Sood V, Sumner MC, Zdraljevic S, Meldi Sholl L, Brickner DG, Ahmed S, Watchmaker L, and Brickner JH. Journal of Cell Biology. 2016 March 14;212(6):633-646.

Kenneth Durbin^ (Kelleher) Quantitation and Identification of Thousands of Human Proteoforms below 30 kDa. Durbin KR, Fornelli L, Fellers RT, Doubleday PF, Narita M, and Kelleher NL. Journal of Proteome Research. 2016 March 4;15(3):976-982.

Sean Allen^ (Scott) Engineering Nanomaterials to Address Cell-Mediated Inflammation in Atherosclerosis. Allen S, Liu Y-G, and Scott E. Regenerative Engineering and Translational Medicine. 2016 March;2(1):37-50.

Anthony Goering^ (Kelleher) Metabologenomics: Correlation of Microbial Gene Clusters with Metabolites Drives Discovery of a Nonribosomal Peptide with an Unusual Amino Acid Monomer. Goering AW, McClure RA, Doroghazi JR, Albright JC, Haverland NA, Zhang Y, Ju K-S, Thomson RJ, Metcalf WW, and Kelleher NL. ACS Central Science. 2016 February 24;2(2):99-108.

Justin Cassidy^ (Carthew) Differential Masking of Natural Genetic Variation by miR-9a in Drosophila. Cassidy JJ, Straughan AJ, and Carthew RW. Genetics. 2016 February;202(2):675-687.

Jeffrey Liu^ (Shea) Transforming growth factor-beta 1 delivery from microporous scaffolds decreases inflammation post-implant and enhances function of transplanted islets. Liu JMH, Zhang J, Zhang X, Hlavaty KA, Ricci CF, Leonard JN, Shea LD, and Gower RM. Biomaterials. 2016 February;80:11-19.

Luke Vistain^ (Meade) Targeted delivery of gold nanoparticle contrast agents for reporting gene detection by magnetic resonance imaging. Vistain LF, Rotz MW, Rathore R, Preslar AT, and Meade TJ. Chemical Communications. 2016 January 4;52(1):160-163.

Eric Hill^ (Petersen) Wnt/Notum spatial feedback inhibition controls neoblast differentiation to regulate reversible growth of the planarian brain. Hill EM and Petersen CP. Development. 2015 December 15;142(24):4217-4229.

Nicolás Peláez^ (Carthew/Amaral) Dynamics and heterogeneity of a fate determinant during transition towards cell differentiation. Peláez N, Gavalda-Miralles A, Wang B, Tejedor Navarro H, Gudjonson H, Rebay I, Dinner AR, Katsaggelos AK, Amaral LAN, and Carthew RW. eLife. 2015 November 19;4:e08924.

Mark Perelis^ (Bass) Pancreatic β cell enhancers regulate rhythmic transcription of genes controlling insulin secretion. Perelis M, Marcheva B, Ramsey KM, Schipma MJ, Hutchison AL, Taguchi A, Peek CB, Hong H, Huang W, Omura C, Allred AL, Bradfield CA, Dinner AR, Barish GD, and Bass J. Science. 2015 November 6;350(6261):aac4250.

Liangliang Hao^ (Mirkin) Biodegradable DNA-Brush Block Copolymer Spherical Nucleic Acids Enable Transfection Agent-Free Intracellular Gene Regulation. Zhang C, Hao L, Calabrese CM, Zhou Y, Choi CHJ, Xing H, and Mirkin CA. Small. 2015 October 28;11(40):5360-5368.

Noelle Wakefield^ (Sontheimer) Primary processing of CRISPR RNA by the endonuclease Cas6 in Staphylococcus epidermidis. Wakefield N, Rajan R, and Sontheimer EJ. FEBS Letters. 2015 October 7;589(20B):3197-3204.

Benjamin Des Soye^ (Jewett) Repurposing the translation apparatus for synthetic biology. Des Soye BJ, Patel JR, Isaacs FJ, and Jewett MC. Current Opinion in Chemical Biology. 2015 October;28:83-90.

Luke Vistain^ (Meade) Targeted Inhibition of Snail Activity in Breast Cancer Cells by Using a CoIII-Ebox Conjugate. Vistain LF, Yamamoto N, Rathore R, Cha P, and Meade TJ. ChemBioChem. 2015 September 21;16(14):2065-2072.

Andrew Scarpelli^ (Leonard) Regulation of Bacterial Gene Expression by Protease-Alleviated Spatial Sequestration (PASS). Pitner RA, Scarpelli AH, and Leonard JN. ACS Synthetic Biology. 2015 September 18;4(9):966-974.

Timothy Sita^ (Mirkin) Ribozyme–Spherical Nucleic Acids. Rouge JL, Sita TL, Hao L, Kouri FM, Briley WE, Stegh AH, and Mirkin CA. Journal of the American Chemical Society. 2015 August 26;137(33):10528-10531.

Steven Philips^ (O'Halloran) Allosteric transcriptional regulation via changes in the overall topology of the core promoter. Philips SJ, Canalizo-Hernandez M, Yildirim I, Schatz GC, Mondragón A, and O'Halloran TV. Science. 2015 August 21;349(6250):877-881.

William Briley^ (Mirkin) Quantification and real-time tracking of RNA in live cells using Sticky-flares. Briley WE, Bondy MH, Randeria PS, Dupper TJ, and Mirkin CA. PNAS. 2015 August 4;112(31):9591-9595.

Annie Bruns^ (Horvath) LGP2 synergy with MDA5 in RLR-mediated RNA recognition and antiviral signaling. Bruns AM and Horvath CM. Cytokine. 2015 August;74(2):198-206.

Elsy Buitrago Delgado^ and Kara Nordin^ (LaBonne) Shared regulatory programs suggest retention of blastula-stage potential in neural crest cells. Buitrago-Delgado E, Nordin K, Rao A, Geary L, and LaBonne C. Science. 2015 June 19;348(6241):1332-1335.

Matthew Henke^ (Kelleher) Large-Scale Metabolomics Reveals a Complex Response of Aspergillus nidulans to Epigenetic Perturbation. Albright JC, Henke MT, Soukup AA, McClure RA, Thomson RJ, Keller NP, and Kelleher NL. ACS Chemical Biology. 2015 June 19;10(6):1535-1541.

Jennifer Ferrer^ (Mirkin/Wertheim) New Tools in Experimental Cellular Therapy for the Treatment of Liver Diseases. Ferrer JR, Chokechanachaisakul A, and Wertheim JA. Current Transplantation Reports. 2015 June;2(2):202-210.

Gabriel Rosanio^ (Uhlenbeck/Widom) In vitro selection of DNAs with an increased propensity to form small circles. Rosanio G, Widom J, and Uhlenbeck OC. Biopolymers. 2015 June;103(6):303-320.

Keila Torre-Santiago^ (Wignall) Kinetochore-independent chromosome segregation driven by lateral microtubule bundles. Muscat CC, Torre-Santiago KM, Tran MV, Powers JA, and Wignall SM. eLife. 2015 May 30;4:e06462.

Amy Sebeson^ (Wang/Widom) Differential Nucleosome Occupancies across Oct4-Sox2 Binding Sites in Murine Embryonic Stem Cells. Sebeson A, Xi L, Zhang Q, Sigmund A, Wang J-P, Widom J, and Wang X. PLoS ONE. 2015 May 18;10(5):e0127214.

Kyle Schneider^ (Weiss) The Structure of an NDR/LATS Kinase–Mob Complex Reveals a Novel Kinase–Coactivator System and Substrate Docking Mechanism. Gógl G, Schneider KD, Yeh BJ, Alam N, Nguyen Ba AN, Moses AM, Hetényi C, Reményi A, and Weiss EL. PLoS Biology. 2015 May 12;13(5):e1002146.

Sayantan Bose^ (Lamb) Timing is everything: Fine-tuned molecular machines orchestrate paramyxovirus entry. Bose S, Jardetzky TS, and Lamb RA. Virology. 2015 May;479-480:518-531.

Yi Liu^ (Jewett) Characterizing and Alleviating Substrate Limitations for Improved in vitro Ribosome Construction. Liu Y, Fritz BR, Anderson MJ, Schoborg JA, and Jewett MC. ACS Synthetic Biology. 2015 April 17;4(4):454-462.

Sarah Sirajuddin^ (Rosenzweig) Enzymatic Oxidation of Methane. Sirajuddin S and Rosenzweig AC. Biochemistry. 2015 April 14;54(14):2283-2294.

Michelle Hung^ (Leonard) Stabilization of Exosome-targeting Peptides via Engineered Glycosylation. Hung ME and Leonard JN. Journal of Biological Chemistry. 2015 March 27;290(13):8166-8172.

Taylor Poor^ (Lamb) On the Stability of Parainfluenza Virus 5 F Proteins. Poor TA, Song AS, Welch BD, Kors CA, Jardetzky TS, and Lamb RA. Journal of Virology. 2015 March;89(6):3438-3441.

Kirby Martinez-Fonts^ (Matouschek) Top-Down 193-nm Ultraviolet Photodissociation Mass Spectrometry for Simultaneous Determination of Polyubiquitin Chain Length and Topology. Cannon JR, Martinez-Fonts K, Robotham SA, Matouschek A, and Brodbelt JS. Analytical Chemistry. 2015 February 3;87(3):1812-1820.

Michelle Hung^ (Leonard) Therapeutic Applications of Extracellular Vesicles: Clinical Promise and Open Questions. György B, Hung ME, Breakefield XO, and Leonard JN. Annual Review of Pharmacology and Toxicology. 2015 January;55:439-464.

William Briley^ (Mirkin) Nanoflares as Probes for Cancer Diagnostics. Randeria PS, Briley WE, Chinen AB, Guan CM, Petrosko SH, and Mirkin CA. Cancer Treatment and Research. 2015;166:1-22.

Timothy Sita^ (Mirkin) Therapeutic Applications of Spherical Nucleic Acids. Barnaby SN, Sita TL, Petrosko SH, Stegh AH, and Mirkin CA. Cancer Treatment and Research. 2015;166:23-50.

Amanda Lewis^ (Raman) Resurgent current of voltage-gated Na+ channels. Lewis AH and Raman IM. Journal of Physiology. 2014 November 15;592(22):4825-4838.

Kara Nordin^ (LaBonne) Sox5 Is a DNA-Binding Cofactor for BMP R-Smads that Directs Target Specificity during Patterning of the Early Ectoderm. Nordin K and LaBonne C. Developmental Cell. 2014 November 10;31(3):374-382.

Annie Bruns^ (Horvath) Antiviral RNA recognition and assembly by RLR family innate immune sensors. Bruns AM and Horvath CM. Cytokine & Growth Factor Reviews. 2014 October;25(5):507-512.

Jia Wu^ (Bagheri) Dynamic transcription factor activity profiles reveal key regulatory interactions during megakaryocytic and erythroid differentiation. Duncan MT, Shin S, Wu JJ, Mays Z, Weng S, Bagheri N, Miller WM, and Shea LD. Biotechnology and Bioengineering. 2014 October;111(10):2082-2094.

Annie Bruns^ (Horvath) The Innate Immune Sensor LGP2 Activates Antiviral Signaling by Regulating MDA5-RNA Interaction and Filament Assembly. Bruns AM, Leser GP, Lamb RA, and Horvath CM. Molecular Cell. 2014 September 4;55(5):771-781.

Jonathan Freaney^ (Horvath) High-Density Nucleosome Occupancy Map of Human Chromosome 9p21–22 Reveals Chromatin Organization of the Type I Interferon Gene Cluster. Freaney JE, Zhang Q, Yigit E, Kim R, Widom J, Wang J-P, and Horvath CM. Journal of Interferon & Cytokine Research. 2014 September 2;34(9):676-685.

Sara Hurtado^ (Sontheimer) SPO24 Is a Transcriptionally Dynamic, Small ORF-Encoding Locus Required for Efficient Sporulation in Saccharomyces cerevisiae. Hurtado S, Kim Guisbert KS, and Sontheimer EJ. PLoS ONE. 2014 August 15;9(8):e105058.

Sarah Sirajuddin^ (Rosenzweig) Effects of Zinc on Particulate Methane Monooxygenase Activity and Structure. Sirajuddin S, Barupala D, Helling S, Marcus K, Stemmler TL, and Rosenzweig AC. Journal of Biological Chemistry. 2014 August 1;289(31):21782-21794.

Kenny Rodriguez^ (Horvath) MDA5 and LGP2: Accomplices and Antagonists of Antiviral Signal Transduction. Rodriguez KR, Bruns AM, and Horvath CM. Journal of Virology. 2014 August;88(15):8194-8200.

Austin Rice^ (Pinkett) Effects of lipid environment on the conformational changes of an ABC importer. Rice AJ, Alvarez FJD, Davidson AL, and Pinkett HW. Channels. 2014 July/August;8(4):327-333.

Renée Robbins^ (Beitel) Non-Canonical Roles for Yorkie and Drosophila Inhibitor of Apoptosis 1 in Epithelial Tube Size Control. Robbins RM, Gbur SC, and Beitel GJ. PLoS ONE. 2014 July 18;9(7):e101609.

Constanza Vásquez Doorman^ (Petersen) zic-1 Expression in Planarian Neoblasts after Injury Controls Anterior Pole Regeneration. Vásquez-Doorman C and Petersen CP. PLoS Genetics. 2014 July 3;10(7):e1004452.

Adam Hockenberry^ (Jewett/Amaral) Quantifying Position-Dependent Codon Usage Bias. Hockenberry AJ, Sirer MI, Amaral LAN, and Jewett MC. Molecular Biology and Evolution. 2014 July;31(7):1880-1893.

Kenny Rodriguez^ (Horvath) Paramyxovirus V Protein Interaction with the Antiviral Sensor LGP2 Disrupts MDA5 Signaling Enhancement but Is Not Relevant to LGP2-Mediated RLR Signaling Inhibition. Rodriguez KR and Horvath CM. Journal of Virology. 2014 July;88(14):8180-8188.

Taylor Poor^ (Lamb) Probing the paramyxovirus fusion (F) protein-refolding event from pre- to postfusion by oxidative footprinting. Poor TA, Jones LM, Sood A, Leser GP, Plasencia MD, Rempel DL, Jardetzky TS, Woods RJ, Gross ML, and Lamb RA. PNAS. 2014 June 24;111(25):E2596-E2605.

Agustina D'Urso^ (Brickner) Mechanisms of epigenetic memory. D'Urso A and Brickner JH. Trends in Genetics. 2014 June;30(6):230-236.

Austin Rice^ (Pinkett) Small Substrate Transport and Mechanism of a Molybdate ATP Binding Cassette Transporter in a Lipid Environment. Rice AJ, Harrison A, Alvarez FJD, Davidson AL, and Pinkett HW. Journal of Biological Chemistry. 2014 May 23;289(21):15005-15013.

Ritika Giri (Carthew) microRNAs suppress cellular phenotypic heterogeneity. Giri R and Carthew RW. Cell Cycle. 2014 May 15;13(10):1517-1518.